H_epsilon_2 = Atom('h')
H_epsilon_1 = Atom('h')
C_beta = Atom('c')
C_epsilon_1 = Atom('c')
H_delta_1 = Atom('h')
H_delta_2 = Atom('h')
C_epsilon_2 = Atom('c')
C_zeta = Atom('c')
C_gamma = Atom('c')
C_delta_2 = Atom('c')
C_delta_1 = Atom('c')
H_beta_3 = Atom('h')
H_zeta = Atom('h')
H_beta_2 = Atom('h')
bonds = [Bond(H_beta_2, C_beta), Bond(H_beta_3, C_beta), Bond(C_gamma, C_beta), Bond(C_delta_1, C_gamma), Bond(H_delta_1, C_delta_1), Bond(C_epsilon_1, C_delta_1), Bond(H_epsilon_1, C_epsilon_1), Bond(C_zeta, C_epsilon_1), Bond(H_zeta, C_zeta), Bond(C_epsilon_2, C_zeta), Bond(H_epsilon_2, C_epsilon_2), Bond(C_delta_2, C_epsilon_2), Bond(H_delta_2, C_delta_2), Bond(C_delta_2, C_gamma), ]
name = 'phe_sidechain'
pdbmap = [('PHE', {'2HD': H_delta_2, '2HE': H_epsilon_2, '2HB': H_beta_2, '1HD': H_delta_1, '1HE': H_epsilon_1, 'CE1': C_epsilon_1, 'CE2': C_epsilon_2, '3HB': H_beta_3, 'CZ': C_zeta, 'CG': C_gamma, 'CD1': C_delta_1, 'CB': C_beta, 'CD2': C_delta_2, 'HZ': H_zeta, }, ), ]
pdb_alternative = {'1HB': '3HB', 'HB2': '2HB', 'HB3': '3HB', 'HB1': '3HB', 'HD1': '1HD', 'HD2': '2HD', 'HE1': '1HE', 'HE2': '2HE', }
amber_atom_type = {H_epsilon_2: 'HA', H_epsilon_1: 'HA', C_gamma: 'CA', H_delta_1: 'HA', H_beta_2: 'HC', C_delta_2: 'CA', C_beta: 'CT', H_zeta: 'HA', C_delta_1: 'CA', H_delta_2: 'HA', H_beta_3: 'HC', C_zeta: 'CA', C_epsilon_1: 'CA', C_epsilon_2: 'CA', }
amber12_atom_type = amber_atom_type
