Class
GffStream
High-level GFF/GTF I/O class.
The GffStream class allows to read and write GTF and GFF files.
Include Headers
seqan/gff_io.h
Remarks
Note that the class GffStream allows to read both GFF 2, 3, and GTF.
For writing, only GFF 3 and GTF are supported.
Data Members
| File format to use for writing. | |
| The names of the sequences (StringSet of CharString), updated when new sequences are seen in GFF file. |
Member Functions
| Constructor. |
Functions
| Add the name of a sequence to a GffStream. | |
| Query a GffStream for being at the end of the file. | |
| Closes a GffStream | |
| Flush to a GffStream | |
| Query a GffStream for errors. | |
| Open a GffStream. | |
| Read a record from a GffStream | |
| Write a record to a GffStream |
Examples
The following example demonstrates reading a GFF file and printing the annotation locations.
File "gff_stream_read.cpp"
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See Also
SeqAn - Sequence Analysis Library - www.seqan.de