Class Specialization
SequenceBitMask
The string set bit string dictionary is a string set of rank support bit strings for constant time acces
of the rank of a specified character at a specified position.
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SequenceBitMask | |||||||
Include Headers
seqan/index.h
Parameters
The value type of the . |
Remarks
This data structure is optimized for very small alphabets, such as Dna or Dna5. Consider using a WaveletTree if your alphabet size is larger.
Specialization of
Metafunctions
| Type of a specific container member (fibre). (RankDictionary) |
Functions
| Clears the rank dictionary. (RankDictionary) | |
| Returns the number of occurrences of a specified character from the start to a specified position. (RankDictionary) | |
| This functions creates the dictionary. (RankDictionary) | |
| This functions creates the dictionary structure. (RankDictionary) | |
| Returns whether or not the rank dictionary is empty. (RankDictionary) | |
| Returns a specific fibre of a dictionary. (RankDictionary) | |
| Returns the character used to substitute the sentinel sign. (RankDictionary) | |
| Returns the character of a specified position. (RankDictionary) | |
| This functions loads a dictionary from disk. (RankDictionary) | |
| This functions saves a dictionary to disk. (RankDictionary) | |
| Sets the sentinel position.. (RankDictionary) | |
| Sets the character used to substitute the sentinel sign. (RankDictionary) |
SeqAn - Sequence Analysis Library - www.seqan.de
