Class
CompressedSA
A suffix array storing only a few suffix array entries and computing the remaining on demand.
Include Headers
seqan/index.h
Parameters
The string containing specific suffix array entries. Types: SparseString | |
The lfTable containg an occurrence table and a prefix sum table. Types: LfTable | |
Possibility to specialize a compressed suffix array. Default: void. |
Remarks
The compressed suffix array can only be used with the FM index.
Functions
| The begin of a container. | |
| Resets an object. | |
| This functions creates a compressed suffix array with a specified compression factor. | |
| Test a container for being empty. | |
| The end of a container. | |
| Returns a specific fibre of a container. | |
| The number of items/characters. | |
| This functions opens a compressed suffix array from disk. | |
| Resizes a container. If the new length exceeds the old length the new elements are filled with copies of | |
| This functions saves a compressed suffix array to disk. | |
| Set the LfTable of the compressed suffix array. | |
| Returns the value stored at a specified position in the compressed suffix-array. |
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