Example Program
Motif Finder
Examples for how to start a motif search using SeqAn's Motif Finder.
File "find_motif.cpp"
A tutorial about motif search.
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Function to output found motifs.
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Motif search on a small set of nucleotide sequences.
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Application of ePatternBranching (h=0)
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Application of ePatternBranching (h=0)
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Application of Pms1-Zoops
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Application of Pmsp-Tcm
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Application of PROJECTION-Oops
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Application of PROJECTION-Omops
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Application of PROJECTION-Zoops
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Application of PROJECTION-Tcm
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Output
[0]: AGCC
[0]: AAGC
[1]: ACAG
[2]: AGAC
[3]: AGCC
[4]: AGGA
[5]: AGTA
[6]: CAGA
[7]: CAGG
[8]: CCAG
[9]: CGCA
[10]: CGGC
[11]: GCAG
[12]: TCAG
[13]: TGCA
[0]: AAGC
[1]: AAGT
[2]: AATC
[3]: ACAG
[4]: ACGC
[5]: ACTC
[6]: AGAC
[7]: AGCA
[8]: AGCC
[9]: AGGA
[10]: AGGC
[11]: AGGG
[12]: AGGT
[13]: AGTA
[14]: AGTC
[15]: AGTG
[16]: AGTT
[17]: ATGC
[18]: ATTC
[19]: CAAT
[20]: CACT
[21]: CAGA
[22]: CAGC
[23]: CAGG
[24]: CATT
[25]: CCAG
[26]: CCGT
[27]: CGCA
[28]: CGGC
[29]: CGGT
[30]: CGTC
[31]: CTGT
[32]: GAAG
[33]: GACA
[34]: GAGT
[35]: GCAA
[36]: GCAC
[37]: GCAG
[38]: GCAT
[39]: GCCA
[40]: GCCG
[41]: GCGG
[42]: GCTG
[43]: GGAA
[44]: GGAG
[45]: GGCC
[46]: GGCG
[47]: GGCT
[48]: GGGA
[49]: GGGC
[50]: GGTA
[51]: GGTC
[52]: GTAG
[53]: GTCA
[54]: TAAG
[55]: TAGT
[56]: TCAA
[57]: TCAC
[58]: TCAG
[59]: TCAT
[60]: TCCG
[61]: TCGG
[62]: TCTG
[63]: TGAG
[64]: TGCA
[65]: TGGC
[66]: TGTC
[67]: TTAG
AGCC
AGCC
TCAG
TCAG
See
SeqAn - Sequence Analysis Library - www.seqan.de