| empPvals | Calculate p-values from a set of observed test statistics and simulated null test statistics |
| hedenfalk | P-values and test-statistics from the Hedenfalk et al. (2001) gene expression dataset |
| hist, | Histogram of p-values |
| hist.qvalue | Histogram of p-values |
| lfdr | Estimate local False Discovery Rate (FDR) |
| pi0est | Proportion of true null p-values |
| plot, | Plotting function for q-value object |
| plot.qvalue | Plotting function for q-value object |
| qvalue | Estimate the q-values for a given set of p-values |
| summary, | Display q-value object |
| summary.qvalue | Display q-value object |
| write.qvalue | Write results to file |