Differential co-expression/association network analysis

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Documentation for package ‘dcanr’ version 1.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cor.pairs	Fast pairwise correlation estimation
dcAdjust	Adjust for multiple testing in differential association analysis
dcEvaluate	Evaluate performance of DC methods on simulations
dcMethods	Get names of differential co-expression methods
dcNetwork	Generate a differential network from a DC analysis
dcPipeline	Run a DC pipeline on a simulation
dcScore	Compute scores from differential association analysis
dcScore-method	Compute scores from differential association analysis
dcTest	Statistical test for differential association analysis
dcZscore	DC analysis using the z-score method
getConditionNames	Get data and conditions from a given knock-down (KD)
getSimData	Get data and conditions from a given knock-down (KD)
getTrueNetwork	Get data and conditions from a given knock-down (KD)
mi.ap	Mutual information using adaptive partitioning
perfMethods	Get names of performance metric methods
performanceMeasure	Performance metrics to evaluate classification
plotSimNetwork	Plot source and true differential networks from simulations
sim102	Simulated expression data with knock-outs