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RNAlib-2.4.17
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Collaboration diagram for Distance Based Partitioning of the Secondary Structure Space:Modules | |
| Computing MFE representatives of a Distance Based Partitioning | |
| Compute the minimum free energy (MFE) and secondary structures for a partitioning of the secondary structure space according to the base pair distance to two fixed reference structures basepair distance to two fixed reference structures. | |
| Computing Partition Functions of a Distance Based Partitioning | |
| Compute the partition function and stochastically sample secondary structures for a partitioning of the secondary structure space according to the base pair distance to two fixed reference structures. | |
| Stochastic Backtracking of Structures from Distance Based Partitioning | |
| Contains functions related to stochastic backtracking from a specified distance class. | |
Files | |
| file | 2Dfold.h |
| MFE structures for base pair distance classes. | |
| file | 2Dpfold.h |
| Partition function implementations for base pair distance classes. | |