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RNAlib-2.4.17
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A breadth-first search heuristic for optimal direct folding paths. More...
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Functions | |
| int | vrna_path_findpath_saddle (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width) |
| Find energy of a saddle point between 2 structures (search only direct path) More... | |
| int | vrna_path_findpath_saddle_ub (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width, int maxE) |
| Find energy of a saddle point between 2 structures (search only direct path) More... | |
| vrna_path_t * | vrna_path_findpath (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width) |
| Find refolding path between 2 structures (search only direct path) More... | |
| vrna_path_t * | vrna_path_findpath_ub (vrna_fold_compound_t *fc, const char *s1, const char *s2, int width, int maxE) |
| Find refolding path between 2 structures (search only direct path) More... | |
| int | find_saddle (const char *seq, const char *s1, const char *s2, int width) |
| Find energy of a saddle point between 2 structures (search only direct path) More... | |
| void | free_path (vrna_path_t *path) |
| Free memory allocated by get_path() function. More... | |
| vrna_path_t * | get_path (const char *seq, const char *s1, const char *s2, int width) |
| Find refolding path between 2 structures (search only direct path) More... | |
A breadth-first search heuristic for optimal direct folding paths.