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RNAlib-2.4.17
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MFE structures for base pair distance classes. More...
Include dependency graph for 2Dfold.h:Go to the source code of this file.
Data Structures | |
| struct | vrna_sol_TwoD_t |
| Solution element returned from vrna_mfe_TwoD() More... | |
| struct | TwoDfold_vars |
| Variables compound for 2Dfold MFE folding. More... | |
Typedefs | |
| typedef struct vrna_sol_TwoD_t | vrna_sol_TwoD_t |
| Solution element returned from vrna_mfe_TwoD() More... | |
| typedef struct TwoDfold_vars | TwoDfold_vars |
| Variables compound for 2Dfold MFE folding. More... | |
Functions | |
| vrna_sol_TwoD_t * | vrna_mfe_TwoD (vrna_fold_compound_t *vc, int distance1, int distance2) |
| Compute MFE's and representative for distance partitioning. More... | |
| char * | vrna_backtrack5_TwoD (vrna_fold_compound_t *vc, int k, int l, unsigned int j) |
| Backtrack a minimum free energy structure from a 5' section of specified length. More... | |
| TwoDfold_vars * | get_TwoDfold_variables (const char *seq, const char *structure1, const char *structure2, int circ) |
| Get a structure of type TwoDfold_vars prefilled with current global settings. More... | |
| void | destroy_TwoDfold_variables (TwoDfold_vars *our_variables) |
| Destroy a TwoDfold_vars datastructure without memory loss. More... | |
| vrna_sol_TwoD_t * | TwoDfoldList (TwoDfold_vars *vars, int distance1, int distance2) |
| Compute MFE's and representative for distance partitioning. More... | |
| char * | TwoDfold_backtrack_f5 (unsigned int j, int k, int l, TwoDfold_vars *vars) |
| Backtrack a minimum free energy structure from a 5' section of specified length. More... | |
MFE structures for base pair distance classes.