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RNAlib-2.4.17
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Collaboration diagram for Deprecated Interface for Plotting Utilities:Data Structures | |
| struct | COORDINATE |
| this is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE More... | |
Functions | |
| int | PS_color_aln (const char *structure, const char *filename, const char *seqs[], const char *names[]) |
| Produce PostScript sequence alignment color-annotated by consensus structure. More... | |
| int | aliPS_color_aln (const char *structure, const char *filename, const char *seqs[], const char *names[]) |
| PS_color_aln for duplexes. More... | |
| int | simple_xy_coordinates (short *pair_table, float *X, float *Y) |
| Calculate nucleotide coordinates for secondary structure plot the Simple way More... | |
| int | simple_circplot_coordinates (short *pair_table, float *x, float *y) |
| Calculate nucleotide coordinates for Circular Plot More... | |
| int | naview_xy_coordinates (short *pair_table, float *X, float *Y) |
Variables | |
| int | rna_plot_type |
| Switch for changing the secondary structure layout algorithm. More... | |
| struct COORDINATE |
this is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE
| int PS_color_aln | ( | const char * | structure, |
| const char * | filename, | ||
| const char * | seqs[], | ||
| const char * | names[] | ||
| ) |
#include <ViennaRNA/plotting/alignments.h>
Produce PostScript sequence alignment color-annotated by consensus structure.
| int aliPS_color_aln | ( | const char * | structure, |
| const char * | filename, | ||
| const char * | seqs[], | ||
| const char * | names[] | ||
| ) |
#include <ViennaRNA/plotting/alignments.h>
PS_color_aln for duplexes.
| int simple_xy_coordinates | ( | short * | pair_table, |
| float * | X, | ||
| float * | Y | ||
| ) |
#include <ViennaRNA/plotting/layouts.h>
Calculate nucleotide coordinates for secondary structure plot the Simple way
| pair_table | The pair table of the secondary structure |
| X | a pointer to an array with enough allocated space to hold the x coordinates |
| Y | a pointer to an array with enough allocated space to hold the y coordinates |
| int simple_circplot_coordinates | ( | short * | pair_table, |
| float * | x, | ||
| float * | y | ||
| ) |
#include <ViennaRNA/plotting/layouts.h>
Calculate nucleotide coordinates for Circular Plot
This function calculates the coordinates of nucleotides mapped in equal distancies onto a unit circle.
| pair_table | The pair table of the secondary structure |
| x | a pointer to an array with enough allocated space to hold the x coordinates |
| y | a pointer to an array with enough allocated space to hold the y coordinates |
| int naview_xy_coordinates | ( | short * | pair_table, |
| float * | X, | ||
| float * | Y | ||
| ) |
#include <ViennaRNA/plotting/naview.h>
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extern |
#include <ViennaRNA/plotting/layouts.h>
Switch for changing the secondary structure layout algorithm.
Current possibility are 0 for a simple radial drawing or 1 for the modified radial drawing taken from the naview program of [5].