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RNAlib-2.4.17
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Methods to generate particular paths such as gradient or random walks through the energy landscape of an RNA sequence. More...
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Macros | |
| #define | VRNA_PATH_STEEPEST_DESCENT 128 |
| Option flag to request a steepest descent / gradient path. More... | |
| #define | VRNA_PATH_RANDOM 256 |
| Option flag to request a random walk path. More... | |
| #define | VRNA_PATH_NO_TRANSITION_OUTPUT 512 |
| Option flag to omit returning the transition path. More... | |
| #define | VRNA_PATH_DEFAULT (VRNA_PATH_STEEPEST_DESCENT | VRNA_MOVESET_DEFAULT) |
| Option flag to request defaults (steepest descent / default move set) More... | |
Functions | |
| vrna_move_t * | vrna_path (vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options) |
| Compute a path, store the final structure, and return a list of transition moves from the start to the final structure. More... | |
| vrna_move_t * | vrna_path_gradient (vrna_fold_compound_t *vc, short *pt, unsigned int options) |
| Compute a steepest descent / gradient path, store the final structure, and return a list of transition moves from the start to the final structure. More... | |
| vrna_move_t * | vrna_path_random (vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options) |
| Generate a random walk / path of a given length, store the final structure, and return a list of transition moves from the start to the final structure. More... | |
Methods to generate particular paths such as gradient or random walks through the energy landscape of an RNA sequence.