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RNAlib-2.4.17
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Functions to evaluate the free energy contributions for internal loops. More...
Functions to evaluate the free energy contributions for internal loops.
Collaboration diagram for Internal Loops:Files | |
| file | internal.h |
| Energy evaluation of interior loops for MFE and partition function calculations. | |
Basic free energy interface | |
| int | vrna_E_int_loop (vrna_fold_compound_t *fc, int i, int j) |
| int | vrna_eval_int_loop (vrna_fold_compound_t *fc, int i, int j, int k, int l) |
| Evaluate the free energy contribution of an interior loop with delimiting base pairs | |
| int | vrna_E_ext_int_loop (vrna_fold_compound_t *fc, int i, int j, int *ip, int *iq) |
| int | vrna_E_stack (vrna_fold_compound_t *fc, int i, int j) |
Boltzmann weight (partition function) interface | |
| FLT_OR_DBL | vrna_exp_E_int_loop (vrna_fold_compound_t *fc, int i, int j) |
| FLT_OR_DBL | vrna_exp_E_interior_loop (vrna_fold_compound_t *fc, int i, int j, int k, int l) |
| int vrna_eval_int_loop | ( | vrna_fold_compound_t * | vc, |
| int | i, | ||
| int | j, | ||
| int | k, | ||
| int | l | ||
| ) |
#include <ViennaRNA/loops/internal.h>
Evaluate the free energy contribution of an interior loop with delimiting base pairs
and
.