libpappsomspp
Library for mass spectrometry
Loading...
Searching...
No Matches
pappso::cbor::psm::PsmSpecPeptidOmsScan Member List

This is the complete list of members for pappso::cbor::psm::PsmSpecPeptidOmsScan, including all inherited members.

addPsmEvalVectorDouble(const QString &eval_name, const QString &eval_value_key, std::vector< double >::iterator begin, std::vector< double >::const_iterator end)pappso::cbor::psm::CborScanMapBase
CborScanMapBase(const PsmFileScanProcess &psm_file_scan_process)pappso::cbor::psm::CborScanMapBase
filterAndSortPsmList() overridepappso::cbor::psm::PsmSpecPeptidOmsScanvirtual
filterPsmListUniqueUniqueProforma()pappso::cbor::psm::CborScanMapBase
fixPositionStart(bool is_reverse, QCborMap &new_cbor_psm, std::size_t offset_position) constpappso::cbor::psm::PsmSpecPeptidOmsScanprotected
getCborPsmList() constpappso::cbor::psm::CborScanMapBase
getCborScanId() constpappso::cbor::psm::CborScanMapBase
getCborScanPrecursor() constpappso::cbor::psm::CborScanMapBase
getCurrentQualifiedMassSpectrumSPtr() constpappso::cbor::psm::CborScanMapBaseprotected
m_decoyPrefixpappso::cbor::psm::PsmSpecPeptidOmsScanprivate
m_PsmFileScanProcesspappso::cbor::psm::CborScanMapBaseprotected
mp_psmSpecPeptidOmspappso::cbor::psm::PsmSpecPeptidOmsScanprivate
populateProteinMapUsingOldProteinMap(const PsmProteinMap &old_protein_map, PsmProteinMap &new_protein_map) constpappso::cbor::psm::CborScanMapBase
process() overridepappso::cbor::psm::PsmSpecPeptidOmsScanprotectedvirtual
PsmSpecPeptidOmsScan(const PsmSpecPeptidOms &psm_specpeptidoms, pappso::PrecisionPtr fragment_tolerance)pappso::cbor::psm::PsmSpecPeptidOmsScan
sequenceAlignment(bool is_reverse, const QCborMap &old_cbor_psm_map, QCborArray &new_psm_arr, pappso::specpeptidoms::SpOMSSpectrumCsp &experimental_spectrum, pappso::specpeptidoms::SemiGlobalAlignment &semi_global_alignment, const pappso::specpeptidoms::SpOMSProtein *protein_ptr)pappso::cbor::psm::PsmSpecPeptidOmsScanprotected
storeAlignment(bool is_reverse, const QCborMap &old_cbor_psm, QCborMap &new_cbor_psm, const QString &accession, const pappso::specpeptidoms::Alignment &alignment)pappso::cbor::psm::PsmSpecPeptidOmsScanprotected
~CborScanMapBase()pappso::cbor::psm::CborScanMapBasevirtual
~PsmSpecPeptidOmsScan()pappso::cbor::psm::PsmSpecPeptidOmsScanvirtual